Visualising Issues With Imported Meshes

Meshes imported into Leapfrog Geothermal may exhibit geometries that cannot be used computationally by Leapfrog Geothermal. For example, problems often arise when a mesh has holes, self-intersections or is non-manifold, and such problematic meshes need to be fixed before they can be used in Leapfrog Geothermal. Leapfrog Geothermal can identify and work with certain situations, such as non-manifold meshes with shared edges with an even number of adjoining triangles, and for other cases Leapfrog Geothermal provides some tools that may fix some meshes. Note that blindly utilising these tools can result in undesirable side effects, so it is best to have a good understanding of the precise nature of the problems prior to selecting and utilising any repair options. Alternatively, understanding the location and nature of the problem may permit manual intervention in the tool generating the mesh that is being imported to Leapfrog Geothermal. This topic describes how to identify issues in imported meshes. It is divided into:

• Examining Mesh Properties
• Visualising Self Intersections
• Visualising Borders
• Options for Handling Mesh Issues

Examining Mesh Properties

After importing a mesh, right click on it in the project tree and select Properties. Information in the General tab can give some insight into any problems with the mesh. These are the Properties window for an open mesh (left) and a closed one:

The Closed, Consistent and Manifold properties are shown for all meshes:

• A “closed” mesh is one for which no borders have been detected.
• A mesh is regarded as “consistent” when its inside can be distinguished from its outside.
• A manifold mesh is a closed mesh for which Leapfrog Geothermal can calculate a volume. If there are issues with parts of the mesh and the volume cannot be calculated, the mesh will be flagged as “non-manifold”, which, in Leapfrog Geothermal, is a general term for geometry issues that limit a mesh’s use. Some non-manifold meshes can be utilised such as meshes with shared edges that have an even number of adjoining triangles.

Information about Borders, Edges and Length is shown for open meshes:

• “Borders” are boundary edges that are not connected to another triangle.
• “Edges” indicates the number of triangle edges that make up the border.
• “Length” is the total length of all border edges.

When Leapfrog Geothermal detects errors in the mesh, additional information is provided in an Errors tab.

Visualising Self Intersections

A mesh with self-intersections is often regarded as open, which limits the mesh’s use in Leapfrog Geothermal. The Errors tab in the Properties window provides a full list of each self-intersection triangle, but this is not useful for visualising where the self-intersections occur. There are three options for visualising self-intersections, which can be used alone or together.

The first option is to add the mesh to the scene and display it by its self intersections, which is one of the colouring options available in the shape list:

The self intersections may be so tiny that visualising them in this way is not useful. You could then use the second option for displaying self-intersections: Using the self intersections object in the project tree. The self intersections object is a sub-mesh that replicates the parts of its parent mesh that have the problematic self-intersections. Its like a copy of the mesh with the valid parts filtered out, and it can be displayed in the scene in the same manner as other meshes. Remove the whole mesh from the scene and add only the self intersections object:

Make sure Show faces () is on and Smooth faces () is off. Pick front and back face shading colours that contrast with your chosen background colour, pale shades on dark backgrounds, dark shades on pale backgrounds.

The problematic triangles can be invisibly small. Pressing the Home button and zooming in to fill the screen can work well if triangles are few and close together.

If, however, the self intersections are spaced at opposite ends of the original mesh, you probably still won’t be able to see them, in which case, the third option for displaying self intersections may be useful. This involves using the Extract Mesh Parts window to view different parts of the mesh. To do this, clear the scene. Next, right-click on the mesh (not the self intersections sub-object) and select Extract Mesh Parts:

In the window that appears, you can sort the mesh parts by either their volume or area and view only the smaller volumes, those likely to be the self intersections, one by one:

Whichever row is selected will appear in the scene behind, as seen above. There are buttons to Select All and Remove All that tick or untick all the mesh parts. Remove Inside-Out will untick any selected meshes that have a different 'sign' from the first mesh part in the list. If the first mesh part is positive, the button will untick selected negative -volume meshes; if the first mesh part is negative, the button will untick selected positive-volume meshes. Remove Below Current will untick all mesh parts below the currently selected mesh part.

Tick the mesh parts you want to extract and click OK to have a new object added to the project tree that contains only the extracted mesh parts. Now you can add only the selected mesh parts into the scene.

Once you’ve identified the areas of interest, add the whole mesh to the scene. Because you will have the mesh itself and its self intersections displayed, you can independently control the visibility of each. On the whole mesh, change the colouring selector to self intersections and the mesh will show hot colours where the mesh is intersected. Try turning Show faces () off but Show edges () on to see just the wireframe of the mesh. You can also adjust the opacity of the mesh to make the whole mesh into a pale background so that the self intersection mesh stands out. To get a better picture of the geometry of the mesh around the self-intersecting triangles, move the scene around to see the shape better in 3D. Click the middle mouse button (scroll wheel button) on a self-intersecting triangle to set the centre of rotation on that triangle. Then click-and-drag the scene up and down and left and right and around to orbit around the point of interest. This will help you visualise the context better.

The self-intersecting triangles can at times look very simple, but zooming in very close to the corners, edges and contacts between triangles may reveal some very small triangles you hadn’t previously noticed.

You can choose to Export the self intersections mesh sub-object, which will only offer the mesh parts that Leapfrog Geothermal has identified as self intersections. Right click the self intersections mesh sub-object and select Export. You will get a similar mesh part selection window to the one described above, but with the addition of a Flip Mesh option to invert the inside/outside identification of the mesh surfaces.

The Cleanup Mesh window has a Remove self-intersections for volumes option that can be useful in fixing some self intersections:

The Remove self-intersections for volumes repair option re-triangulates self-intersecting triangles and trims away remaining open surfaces, whether they lie inside or outside the mesh.

• Before applying the Remove self-intersections for volumes option, check whether the mesh is open or closed. A mesh may appear to be closed in the scene but the Closed property will be false. Such a mesh may be made up of open parts that do not join up perfectly to make a closed mesh. If Remove self-intersections for volumes is enabled for such a mesh, it may disappear when it is trimmed.
• Remove self-intersections for volumes should not be enabled for surface-like open meshes. You may wish to enable Remove self-intersections for volumes if a mesh is reporting as open but is more volume-like than surface-like. Such a mesh may have a single open part that needs to be removed, or it may have open parts that line up perfectly and can be re-triangulated to form a closed mesh.

If you enable this option, check the resulting mesh’s properties and that is appears in the scene as you expect.

Visualising Borders

Leapfrog Geothermal may regard a mesh as open when it appears to be closed. Here a mesh that appears to be a closed volume is displayed in the scene:

To visualise where the borders are on the mesh, add the border edges mesh sub-object to the scene. Here a green line highlights where the small border is, representing a tear in the mesh:

You can right click the border edges sub-object in the project tree and select Export to export Leapfrog Geothermal polylines in *.LFPL format.

Visualising Non-Manifold Edges

Non-manifold edges are a common reason that a volume cannot be calculated for the mesh. This mesh is reporting a non-manifold mesh problem :

To visualise where the non-manifold edges are on the mesh, add the non-manifold edges mesh sub-object to the scene. Here a green line highlights where the non-manifold edge is:

You can right click the non-manifold edges sub-object in the project tree and select Export to export Leapfrog Geothermal polylines in *.LFPL format.

Options for Handling Mesh Issues

The best option for issues with an imported mesh is to fix the issues in the application of origin, and diagnosing the issues in Leapfrog can be of some help in doing so. But when fixing the mesh outside Leapfrog Geothermal is not possible, there are mesh repair options available through the Cleanup Mesh window. This is opened when meshes are imported, but you can also open it by double-clicking on a mesh:

However, some options can have unexpected results and so it is best to have a good understanding of the precise nature of the problems prior to selecting and utilising any repair options. The Cleanup Mesh window can be opened by double-clicking on an imported mesh in the project tree. See Cleaning Up a Mesh for more information.

When these mesh repair options cannot fix the problems, consider whether you need to use the problem part of the mesh. It could be that the issues you have identified lie outside the are in which you are modelling. If Leapfrog Geothermal does not limit the use of this mesh in your model, using the mesh might not be an issue.

If you do not need to use the problem part of the mesh but Leapfrog Geothermal limits your use of the mesh due to the errors identified, you could use the Extract Mesh Parts tool to extract the parts of the mesh you want to work with, leaving out the parts that have issues.

If you cannot resolve issues with a mesh, contact support as described in Getting Support. When doing so:

• Include a zipped copy of the project that includes the mesh.
• Identify the source of the mesh.

 

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